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2023-1-BG01-KA220-HED-000155777 – DigiOmica

Welcome to your Module 7 EN

The par-SeqFISH is a genome imaging approach that reveals the gene expression in a spatial context with a high resolution.

The single-cell transcriptomics with combinatorial barcoding approaches include the following methods:

The microbial consortia in environmental habitats comprise a complex and dynamic system and bear all the difficulties in their transcriptomics data generation and interpretation.

The principal protocol for the analysis of partial environmental transcriptomes comprises the following workflow:

Transcripts annotation means assembly of constructs using either mapping against reference genomes or de novo assembly

Environmental transcriptomics retrieves transcriptomes (mRNA) of microbial assemblages from the environment to understand their interactions and the interactions with the environment.

The high-throughput methodologies, based on sequencing of single-cell RNA and supporting the single-cell resolution capability of the sequencing process include:

MATQ-seq techniques isolates single cells into separate wells of single-well plates and performs individual indexing reactions to generate sequencing libraries.

PETRI-seq is a technique that allows prokaryotic expression profiling by tagging RNA in situ followed by sequencing.

Seq-Well method explores droplets-based cell capture and barcoding.