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2023-1-BG01-KA220-HED-000155777 – DigiOmica

Welcome to your Module 7 EN

The principal protocol for the analysis of partial environmental transcriptomes comprises the following workflow:

The single-cell transcriptomics with combinatorial barcoding approaches include the following methods:

PETRI-seq is a technique that allows prokaryotic expression profiling by tagging RNA in situ followed by sequencing.

Transcripts annotation means assembly of constructs using either mapping against reference genomes or de novo assembly

The ProBac-seq protocol exploits libraries of RNA probes and microfluidic commercial platforms to perform single-cell RNA sequencing.

MATQ-seq techniques isolates single cells into separate wells of single-well plates and performs individual indexing reactions to generate sequencing libraries.

Seq-Well method explores droplets-based cell capture and barcoding.

The high-throughput methodologies, based on sequencing of single-cell RNA and supporting the single-cell resolution capability of the sequencing process include:

Environmental proteomics possesses potential for generating innovative hypotheses about microbial processes.

Some of the protocols that facilitate the analyses of partial environmental transcriptomes include: